Informacje

Publications in JCR indexed journals:

Overview of MIAP:

Markiewicz Tomasz, Korzynska Anna, Kowalski Andrzej, Swiderska-Chadaj Zaneta, Murawski Piotr, Grala Bartlomiej, Lorent Malgorzata, Wdowiak Marek, Zak Jakub, Roszkowiak Lukasz, Kozlowski Wojciech, Pijanowska Dorota, MIAP – Web-based platform for the computer analysis of microscopic images to support the pathological diagnosis, Biocybernetic and Biomedical Engineering, 2016, 36:597-609 (link)

Presentations and validations of the algorithms:

Swiderska-Chadaj Zaneta, Markiewicz Tomasz, Grala Bartlomiej, Lorent Malgorzata, Content-based analysis of Ki-67 stained meningioma specimens for automatic hot-spot selection, Diagnostic Pathology 2016, 11:93 (link)

Swiderska Zaneta, Korzynska Anna, Markiewicz Tomasz, Lorent Malgorzata, Zak Jakub, Wesolowska Anna, Roszkowiak Lukasz, Slodkowska Janina, Grala Bartlomiej, Comparison of the Manual, Semiautomatic, and Automatic Selection and Leveling of Hot Spots in Whole Slide Images for Ki-67 Quantification in Meningiomas, Analytical Cellular Pathology 2015, Vol. 2015:Article ID 498746 (link)

Wdowiak Marek, Markiewicz Tomasz, Osowski Stanislaw, Patera Janusz, Kozlowski Wojciech, Novel segmentation algorithm for identification of cell membrane staining in HER2 images, Pattern Recognition Letters 2016, 84:225-231 (link)

Registration and image quality studies:

Korzynska Anna, Roszkowiak Lukasz, Pijanowska Dorota, KozLowski Wojciech, Markiewicz Tomasz , The influence of the microscope lamp filament colour temperature on the process of digital images of histological slides acquisition standardization, Diagnostic Pathology 2014, 9(Suppl 1):S13 (link)

Roszkowiak Lukasz, Korzynska Anna, Zak Jakub, Pijanowska Dorota, Swiderska-Chadaj Zaneta, Markiewicz Tomasz, Survey: Interpolation methods for whole slide image processing", Journal of Microscopy, 2016, DOI: 10.1111/jmi.12477 (link)

Other non-JCR journal papers:

Markiewicz Tomasz, Dziekiewicz Mirollaw, Kozlowski Wojciech, A sequential extended regional maxima transformation with contrast-based criterion for image segmentation, “Przeglad Elektrotechniczny” 2015, 91(7), pp. 13-15 (link)

Markiewicz Tomasz, Swiderska Zaneta, Grala Bartlomiej, Kozlowski Wojciech, Automatic ROI selection in virtual slide images for assessment of pathomorphological diagnostic, “Przeglad Elektrotechniczny” 2015, 91(7), pp. 1-4 (link)

International conference proceedings and presentations:

Presentations and validations of the algorithms:

Swiderska Zaneta, Markiewicz Tomasz, Grala Bartomiej, Slodkowska Janina, Hot-spot Selection and Evaluation Methods for Whole Slice Images of Meningiomas and Oligodendrogliomas, 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), ISSN 978-1-4244-9270-1/15, pp. 6252-6256, (link), poster (link)

Wdowiak Marek, Markiewicz Tomasz, Osowski Stanislaw, Swiderska Zaneta, Patera Janusz, Kozlowski Wojciech, Hourglass shapes in gray-level hit-or-miss transform for membrane segmentation in HER2/neu images, International Symposium on Mathematical Morphology – ISMM, 27-29 May 2015, Reykjavik, Islandia, LNCS 9082, pp. 3-14, (link), presenation (link)

Wdowiak Marek, Markiewicz Tomasz, Osowski Stanislaw, Patera Janusz, Kozlowski Wojciech, Gradients and active contour models for localization of cell membrane in HER2/neu images, 16th International Conference Computer Analysis of Images and Patterns (CAIP), 2-4 September 2015, Valletta, Malta, W: Azzopardi, George, Petkov, Nicolai, Computer Analysis of Images and Patterns, LNCS 9256, pp. 432-444, (link), poster (link)

Swiderska Zaneta, Markiewicz Tomasz, Grala Bartlomiej, Kozlowski Wojciech, Texture and mathematical morphology for hot-spot detection in whole slice images of meningiomas and oligodendrogliomas, 16th International Conference on Computer Analysis of Images and Patterns, 2-4 September 2015, Valletta, Malta, W: Azzopardi, George, Petkov, Nicolai, Computer Analysis of Images and Patterns, LNCS 9257, pp. 1-12, (link), poster (link)

Grala Bartlomiej, Swiderska-Chadaj Zaneta, Markiewicz Tomasz, Lorent Malgorzata, Grading of oligodendroglioma based on Ki-67 labeling index assessment performed manually and automatically in hot-spot fields, XXXI International Congress of the International Academy of Pathology and 28th Congress of the European Society of Pathology, 25 – 29 September 2016, Cologne, Virchows Archives 2016, vol. 469 Suppl. 1, S26-27, presentation (link)

Swiderska-Chadaj, Z., Markiewicz, T., Grala, B., & Slodkowska, J. (2016). Local Binary Patterns and Unser Texture Descriptions to the Fold Detection on the Whole Slide Images of Meningiomas and Oligodendrogliomas. In XIV Mediterranean Conference on Medical and Biological Engineering and Computing 2016 (pp. 388-392). Springer International Publishing., (link), poster (link)

Markiewicz Tomasz, Swiderska-Chadaj Zaneta, Grala Bartlomiej, Lorent Malgorzata, Kozlowski Wojciech, Semi-automatic and automatic Ki-67 index examination in whole slide images of meningiomas, 3th European Congress on Digital Pathology, May 25th-28th 2016 in Berlin, poster (link)

Markiewicz Tomasz, Swiderska-Chadaj Zaneta, Grala Bartlomiej, Murawski Piotr, Kowalski Andrzej, Multitreading and GPU Computing in Matlab for Acceleration of Hot-Spot Detection in Brain Tumour Virtual Slides, ESCO 2016, s. 167, (link), presentation (link)

Markiewicz Tomasz, Swiderska Zaneta, Grala Bartlomiej, Kozlowski Wojciech, Automatic ROI selection in virtual slide images for assessment of pathomorphological diagnostic, 15th International conference “Computational Problems of Electrical Engineering” CPEE 2014, 9-12 September 2014, Terchova, (link), poster (link)

Registration and image quality studies:

Korzynska Anna, Roszkowiak Lukasz, Pijanowska Dorota, Kozlowski Wojciech, Markiewicz Tomasz, The rules of acquiring digital images of the IHC stained tissue samples in terms of colour temperature and tint, Digital Pathology Congress 2014, 2-4 December 2014 London, poster (link)

Korzynska Anna, Roszkowiak Lukasz, Pijanowska Dorota, Kozlowski Wojciech, Markiewicz Tomasz, The Influence of the Microscope Lamp Filament Colour Temperature on the Process of Digital Images of Histological Slides Acquisition Standardization, 12th European Congress of Digital Pathology 2014, 18-21 June 2014, Paris, poster (link)

Markiewicz Tomasz, Swiderska Zaneta, Grala Bartlomiej, Slodkowska Janina, Wdowiak Marek, Impact of staining method and automatization of hot-spot selection on Ki-67 index in meningiomas and oligodendrogliomas, 27th European Congress of Pathology in 2015, 5-9 September 2015, Beograd, Serbia, Virchows Archives vol. 467, pp. 236, poster (link)

Anna Korzynska, Lukasz Roszkowiak, Jakub Zak, Dorota Pijanowska, Tomasz Markiewicz; “Color standardization for the immunohistochemically stained tissue section images” 2016 IEEE International Conference on Imaging Systems and Techniques, 4 -6 October 2016, Chania, Greece; 2016 IST Proceedings, (link), presentation (link)

Research and pilot studies:

Markiewicz Tomasz, Wdowiak Marek, Slodkowska Janina, Danilewicz Marek, Mlot Beata, Kozlowski Wojciech, Cell-oriented algorithm for automated quantitation of CAIX expression in Renal Cell Carcinoma (the preliminary study), Digital Pathology Congress 2014, 2-4 December 2014 London, poster (link)

Markiewicz Tomasz, Dziekiewicz Miroslaw, Kozlowski Wojciech, A sequential extended regional maxima transformation with contrast-based criterion for image segmentation, 15th International conference “Computational Problems of Electrical Engineering” CPEE 2014, 9-12 September 2014, Terchova, poster (link)

Les Tomasz, Markiewicz Tomasz, Jesiotr Marzena, Kozlowski Wojciech, Brzoskowska Urszula, HER2/CEN17 biomarkers detection in CISH images, 17th International Workshop "Computational Problems of Electrical Engineering" CPEE 2016, 14-17 September 2016, Sandomierz, (link), presentation (link)

Other presentations in seminars, conferences etc.:

In English:

Jakub Zak, Anna Korzynska, Lukasz Roszkowiak, Dorota Pijanowska, Marek Dawgul, Konrad, Dudzinski, Tomasz Markiewicz; “Colour Recognition and Standardization Algorithm for Colour Calibration Slide Used in Digital Pathomorphology” XLIII Annual European Society for Artificial Organs Congress, 14 – 17 WrzeSnia 2016, Warszawa, Polska; ESAO 2016;poster (link)

Tomasz Markiewicz, Anna Korzynska, Andrzej Kowalski, Zaneta Swiderska-Chadaj, Piotr Murawski, Bartlomiej Grala, Malgorzata Lorent, Marek Wdowiak, Jakub Zak, Lukasz Roszkowiak, Dorota Pijanowska, Wojciech Kozlowski; “MIAP (PIKAOM) – a web-based platform to aid WSI computer analysis by pathologists and researcher", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska MCB, 2016, poster (link)

Lukasz Roszkowiak, Anna Korzynska, Jakub Zak, Dorota Pijanowska, Zaneta Swiderska-Chadaj, Tomasz Markiewicz; “Methods of interpolation for whole slide image processing", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska; MCB, 2016; poster (link)

Jakub Zak, Anna Korzynska, Lukasz Roszkowiak, Dorota Pijanowska; “Colour slide for colour standardization procedure, implemented on the MIAP (PIKAOM) Platform", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska; MCB, 2016; poster (link)

Anna Korzynska, Lukasz Roszkowiak, Jakub Zak, Dorota Pijanowska, Krzysztof Siemion, Tomasz Markiewicz; “The Role of Microscope Lamp Filament Colour Temperature in the Process of Digital Standardization of Histological Slides Acquisition", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska; MCB, 2016; poster (link)

Anna Korzynska, Lukasz Roszkowiak, Urszula Neuman, Carlos Lopez, Marylene Lejeune, Ramon Bosh; “Existing methods of evaluation of immunohistochemically stained tissue sections, implemented on the MIAP (PIKAOM) Platform", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska; MCB, 2016; poster (link)

Lukasz Roszkowiak, Anna Korzynska, Jakub Zak, Dorota Pijanowska, Krzysztof Siemion, Wojciech Kozlowski, Renata Maryniak, Tomasz Markiewicz; “The estimation of MetpiKi67 Index of Proliferation in samples from patients with Diffuse Large B-cell Lymphoma", 150. Seminarum MCB, Micro and Nanosystems in Biochemical Analysis, 12 – 14 Października 2016, Warszawa, Polska; MCB, 2016, poster (link)

In Polish:

Tomasz Markiewicz, PIKAOM czyli projekt konsultacyjnej platformy internetowej dla komputerowych analiz obrazów wspierających diagnostykę histopatologiczną w Wojskowym Instytucie Medycznym, XX Jubileuszowy Zjazd Polskiego Towarzystwa Patologów, 2-4.06.2016 Warszawa – wykład plenarny (link)

Korzynska Anna, Cyfrowe przetwarzanie obrazu w praktyce diagnostycznej, Konferencje „Digital dla Medycyny” organizowane przez Towarzystwo Marketingu Medycznego w Biznes Center Club w Warszawie, 26.02.2015, referat. (link)

Swiderska Zaneta, Markiewicz Tomasz, Korzynska Anna, Grala Bartlomiej, Detekcja i eliminacja obszarów zawierających wylewy krwi w wirtualnych slajdach przedstawiających oponiaki oraz skąpodrzewiaki, XIX. Konferencja Biocybernetyka i Inżynieria Biomedyczna, 1, ISSN 978-83-937303-2-2, pp. 192, poster (link)

Tomasz Markiewicz, Andrzej Kowalski, Platforma analizy danych obrazowych PIKAOM – narzędzie inżyniera i lekarza, Zebranie Członków Polskiego Komitetu SEP ds. Zastosowań Pola Elektromagnetycznego w Medycynie - Seminarium Naukowe, 15 kwietnia 2016, Warszawa, referat (link)

Anna Korzynska, Platforma internetowa komputerowej analizy obrazów mikroskopowych do wspomagania współczesnej diagnostyki patomorfologicznej, Seminarium o postępach pracy w projektach realizowanych przez IBIB im. Macieja Nałęcza PAN, 13.01.2016, referat (link)